NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25131J35506_1020788

Scaffold JGI25131J35506_1020788


Overview

Basic Information
Taxon OID3300002511 Open in IMG/M
Scaffold IDJGI25131J35506_1020788 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)904
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007893Metagenome / Metatranscriptome343Y
F021647Metagenome218N
F105886Metagenome100N

Sequences

Protein IDFamilyRBSSequence
JGI25131J35506_10207881F007893N/AQRSDLLMAEPFGVHFEVTGPVFDGSGLKVMQGIINRGLFDIAVLEGANKVKDQLYGPPASQYWKSKPADRHGAHTRDLKRRVAASQPSDNLAIFNAGGVHYAEKVEALYHMFENATNAINRDKAALYHKYIGGALIEAFD*
JGI25131J35506_10207882F021647GAGGLSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPILAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIEVGTLGLDG*
JGI25131J35506_10207883F105886GGAGLELWDSMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATIPFDIQLYEEVTITP*
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