NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25133J35611_10013172

Scaffold JGI25133J35611_10013172


Overview

Basic Information
Taxon OID3300002514 Open in IMG/M
Scaffold IDJGI25133J35611_10013172 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3506
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013466Metagenome271Y
F060341Metagenome133Y
F086180Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
JGI25133J35611_100131723F013466AGGAGGMSKYGFKKGDLLRWTDYTATDNTHSPVLRRQPKSIVGLFLGMRPVPNMNLAGDIIVLVGDKKVFWDGWQCEKLDKGEWTCK*
JGI25133J35611_100131724F086180AGGAGMQVGDLVRVLVGEHKEDFPLGMVIGFDEDDDPIVIERGQKLPHYRSHLEVIHESR*
JGI25133J35611_100131726F060341GGAGGMKVGDLVKFETSKSLSIGLVIETGIYVGNKDVKVCWHGKDIRTEYSGILEVINENN*
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Institute for Fundamental Biomedical Research
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