NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25133J35611_10030342

Scaffold JGI25133J35611_10030342


Overview

Basic Information
Taxon OID3300002514 Open in IMG/M
Scaffold IDJGI25133J35611_10030342 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2023
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012401Metagenome / Metatranscriptome281Y
F027156Metagenome195Y
F029745Metagenome187Y
F040056Metagenome / Metatranscriptome162Y
F048570Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
JGI25133J35611_100303421F029745GAGGVASKAPRVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGDSWDVYTRRDTLEVLSRANAS*
JGI25133J35611_100303422F040056GGAGMFTPGATLWRFCLVQTQADFRIGTLLRWNAGNTGEPDDIDELGIVIQMPGANWDGNYHISWCTTNTVSHHSPDMVEESLYQRQMEIVG*
JGI25133J35611_100303423F027156GGAGMMPKVGQLLRWYDNFTFDDDGPNHDVGIVKEVXLEGVNFFDGDEYQYVVVVDWCKGPHHSLHDQEEWEESIRTNEIVVV*
JGI25133J35611_100303425F048570GGAGGVKIGDLVRCRPRDPGENYDAWLGLIISKSYSGQHTVQWVCSDGRGDVEEVNHTPQELEVISENR*
JGI25133J35611_100303429F012401GGAGGMIXGILSLEKAALEKLTEDRIASGSLGEEVEEVLTAAGIYWDTLNSEYFSIDNFQRETFERLAKEYASQDYA*
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