NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25134J35505_10013050

Scaffold JGI25134J35505_10013050


Overview

Basic Information
Taxon OID3300002518 Open in IMG/M
Scaffold IDJGI25134J35505_10013050 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2698
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006483Metagenome / Metatranscriptome372Y
F033643Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
JGI25134J35505_100130507F006483N/AMGRYIHTXCTXTENHAEGTYTFTGPCVKTQKPYSVTIPSHELWDLNQGELLQVALKSLNADDREFVASGYSPEGWKQLFSA*
JGI25134J35505_100130508F033643N/AMSEEQYPIMSEEPMFSASEIYPGFSATFANGWEISVQWGRNHYCANRNNPNKESRRSKTAEVAIFAPXKDGFPRDWWSYDEDLNEVVEQPDETYVNGHLTTDQVANIIAIISKKSA*
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