NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25130J35507_1002029

Scaffold JGI25130J35507_1002029


Overview

Basic Information
Taxon OID3300002519 Open in IMG/M
Scaffold IDJGI25130J35507_1002029 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6072
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001992Metagenome607Y
F003616Metagenome477Y
F004658Metagenome429Y
F022118Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
JGI25130J35507_100202911F001992AGGMVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATISGGSFLNSIAGFFNIKFPDTLPEWLTKLFTTGWNGVAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRIINGQ*
JGI25130J35507_100202912F000730N/AMAFTNIQKIGYLILVNELIPPEIIPLVWFSCISVTIYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*
JGI25130J35507_10020292F022118N/AMITIPDFKCSKQSSHGREERIEFIISEVKKHPDFHFEGAAYTKEKCSDLASVDDLINLCLRMMHYAPQTRKDITEQILMELKII*
JGI25130J35507_10020295F004658N/AMPEYLKKVYDFFKTNNTAKDVLIGSVSFIAGGFVLDRILRRDEDQDEDS*
JGI25130J35507_10020298F003616AGGAMIWSEKLGHEIGTYNSLGGLRINPKPFIHSTLNTIVTCRICKGTGLNAITHESGLVTLNKCVLCKGIKRRSNRI*
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