NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25130J35507_1005994

Scaffold JGI25130J35507_1005994


Overview

Basic Information
Taxon OID3300002519 Open in IMG/M
Scaffold IDJGI25130J35507_1005994 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3279
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F023963Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
JGI25130J35507_10059943F023963GGAGMATPSNTHQKSIEFDEITLFSIDKSVYDWFNTKHATNIQGRKVPVMFGSWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNVDRFVFPQADGGPRIQISRRVAMSNFDANERVPFDGPHMYSSSRRRSDAPVMEVTTIPWPDFVNIPYTITFWSSYVRHANYFNDRIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLLKKADASVTRTSSKMLMSEGYMESPRMDAPGHKSIDEILTHERAKAPHQYPEPMPPGLGKVNYGSLNNSDFGLSKYNQPQQARVGGGKVDYSNLSDYGLNKYTEM*
JGI25130J35507_10059944F016597N/AMSDNNTVPYTWNGTGNHGTFPYASSTGDADYGLFFTPREMELFNDYNTELLGIIAQTGIIYYRIEPDSSDPNSIYGESEIKVTRDPVQVYSWVMLDEPETETNSFTVDTRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEILRASVPNFVFSYPQTKLGVIVRCLSVREGVFDPDRDFVNKEYVGDSENPY*
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