NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25130J35507_1008343

Scaffold JGI25130J35507_1008343


Overview

Basic Information
Taxon OID3300002519 Open in IMG/M
Scaffold IDJGI25130J35507_1008343 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2679
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021116Metagenome220Y
F091868Metagenome107N

Sequences

Protein IDFamilyRBSSequence
JGI25130J35507_10083431F021116GAGGLTVKIESNFGREIMKNIDAQWTRIENRHGGGIPDLYGIRDGVSIWLELKCIKKNSINISPLQISWNYNHFQQNGKNYYIVRDTR
JGI25130J35507_10083432F091868AGGAMGDRVSISFKDSDGDESVVLFHHWGGTDFPKVALDWFKGFKKDINSTAKKNSSNPTTRFEARNIMAQFLQWIGKNNHYRECIGFEKDENGNDMDWENSKPIYSDDQLSHSIYFGKDQNDGDNSDNGHYVINTRDGKMQXDRGQFIS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.