Scaffold JGI25130J35507_1020474

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25130J35507_1020474

Scaffold JGI25130J35507_1020474

Overview

Basic Information
Taxon OID	3300002519 Open in IMG/M
Scaffold ID	JGI25130J35507_1020474 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1529
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)	300
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044423	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10204741	F044423	GGAG	LRKNSKENFKSLTTQSSRIFHNPRRSWEDMCFALAGMDRLIARYARLKYAGENSHYPEISNYVYREIVKMGKAQGWKHRPRWSRPTDIPMDVRGFFAYRLAELALQENVGSDRCRRCNGRGTIHTGFKSMDCFSCEGSGILKRTETYRAKFMGVHRVTWERQWKYRFRQHILGIFDVFEF

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