NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25130J35507_1026738

Scaffold JGI25130J35507_1026738


Overview

Basic Information
Taxon OID3300002519 Open in IMG/M
Scaffold IDJGI25130J35507_1026738 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024648Metagenome205Y
F073421Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
JGI25130J35507_10267381F073421GGAGGMGYRSHVVLAISKHLTPFFMMKLSQNKEAEELVFKHADEFDRDYCDDKSWLIRFDSIKWYESYEDIQTLESFIAEASSDEYEFEVDGKKEHSSEHIRFVRVGEESDDIECSGDGFWDIYPHTSISY*
JGI25130J35507_10267383F024648AGGAMCEYHLNVGDMFRTKQGLGLIVKKTNGYFHYSNVGDDQRKNYQTIAIKQFYNYCDDRSHNQVLEVILLPNRKYRRKRK*
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