Scaffold D14H2_10136955

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold D14H2_10136955

Scaffold D14H2_10136955

Overview

Basic Information
Taxon OID	3300002520 Open in IMG/M
Scaffold ID	D14H2_10136955 Open in IMG/M
Source Dataset Name	Gut microbiomes of Pimephales promelas (fathead minnow) during Triclosan exposure experiment - D14H2- High Triclosan exposure day 14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1040
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fish → Digestive System → Intestine → Unclassified → Pimephales Promelas Gut → Pimephales Promelas Gut Microbial Communities From The University Of Colorado, Denver, Usa, During Triclosan Exposure Experiment

Source Dataset Sampling Location
Location Name	Denver, Colorado, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-104.9847	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079293	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
D14H2_101369551	F079293	N/A	MGKKGDLGSFEHCMVVGARRVGLSISQCAQLLGFSHTTISRVYNEWCEKGKTSSMPQSCGPKCLVDARGQRRMGRLIQADRRATLTEI

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