Scaffold JGI24132J36420_10005118

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24132J36420_10005118

Scaffold JGI24132J36420_10005118

Overview

Basic Information
Taxon OID	3300002538 Open in IMG/M
Scaffold ID	JGI24132J36420_10005118 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5567
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.2905	Long. (^o)	-156.788708	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005327	Metagenome / Metatranscriptome	404	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24132J36420_100051186	F005327	GAG	MIFGVNATKCAVVIAETKGAGDKFVITAIRPIPFQVRSGDDLAELRQSLIAIFDRHGRGAGSVIALLKCSSGRFGSCLEAIKGEAMIELAASQRGLRVVKVAPQSLKKTLGCATDQKWRDRAGELFNAGGKHRNWSRGAAGAVAVAFKVAGE*

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