NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25381J37097_1009129

Scaffold JGI25381J37097_1009129


Overview

Basic Information
Taxon OID3300002557 Open in IMG/M
Scaffold IDJGI25381J37097_1009129 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003391Metagenome / Metatranscriptome489N
F018144Metagenome / Metatranscriptome236N
F054603Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
JGI25381J37097_10091291F054603GAGGMSLVKWARKTVDRNRRSRKAISTIMANLTMLIIVVSLSSLLFVWAVSSFGAYQGGAGYWFSSRSVANQERMSVEGAYFYQNGGLNYALVYVRN
JGI25381J37097_10091292F018144GGAMKSLRWVRKDKKGINTILASLLMVVIVVVAAVMVYAWSTGLLSSLLVQNPVPKESLNYDSFNYGPNSNVTIFIRNSGSAGVTLQTYYVKDNSGNQYTSPSTWTAGPIAPNAVNATLIKIYTQCGTCTYSNGAPTSGFQFVAGNSYTITVVTTRNNQFTWSLTK*
JGI25381J37097_10091293F003391AGGAGMRKIRKITRDKKGIDTILAALLMVVIVVVAAVMVYAWSTGLLSALLVQNPVPKESMNFENFAFNTNNMNLTLNVRNTGSVAIAFASYYVKDSNGNQYARLSWPTDNAGKYPAAVNPNGLISVNIAISSACGSSCTGATYQFSSGLSYTVTLVTTRNNQFVWQGTR*
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