NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25385J37094_10000002

Scaffold JGI25385J37094_10000002


Overview

Basic Information
Taxon OID3300002558 Open in IMG/M
Scaffold IDJGI25385J37094_10000002 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41513
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (64.71%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003037Metagenome / Metatranscriptome511Y
F005263Metagenome / Metatranscriptome406Y
F005627Metagenome / Metatranscriptome394Y
F005700Metagenome / Metatranscriptome392N
F007915Metagenome / Metatranscriptome342Y
F022852Metagenome / Metatranscriptome212N
F023823Metagenome208N
F030030Metagenome / Metatranscriptome186Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y
F061700Metagenome / Metatranscriptome131Y
F073400Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
JGI25385J37094_1000000215F003037GGAGMCGKDLDDDKAMANFLVCGDSSHGLLRFFTGDGCYFTTDERVAEELMKKGKRVHVVDPKEFFGNQTINLE*
JGI25385J37094_1000000217F007915GAGMSLAEAAKPALPSSTLRSYAMIGIVLYAFGLVLNEIGNGLAQLWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGIFYVSEPDQTYAVSGLKIGSYTHYVGLGLIGFTMILLIALAFYLTRAKSAHRALPKQDPGSTS*
JGI25385J37094_1000000218F005700GGALTYRTEYTLGFLALLPLLATGVAKGTGWLVTVVVVYVGVPLLIWSLLVDRLALLVLRIICQLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTEVTPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAIALGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAMTMARLFPQVSGPSLPASSAPTLRSVRVNEDTKQTAQPHS*
JGI25385J37094_1000000222F005263N/ALERRARRIFTIDHDVSEKIDELAXGHTLEVNVLVNKAIRRYVEWGRYVDTFKLVTSDPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLICKIGPASTLRTIVPKSFKEQLAKQSIERTVGS*
JGI25385J37094_1000000227F046962GGAMEEIANSGYPPETTSRTVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGSHREWMKGREVYFKVEGKVDGQNCLDEAAPRSI*
JGI25385J37094_1000000228F042845AGGAGMXTRKWKAFLRMNGETTVDTSQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQTPRRRGRGQVGD*
JGI25385J37094_1000000229F030030AGGAGMAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQLPRENHSNLIQSSIYGGDSRNSRMLVSPVARLRQ*
JGI25385J37094_1000000233F061700N/AMCDKCHRFFVISYEKNEKGEVVEIGHELDIRIKASGVVRVDESEPQRGFERNPPARKYEEQTCW*
JGI25385J37094_1000000241F023823GGGGGLEPAEALVLLSLRYVSGSKCWCLIELGDETKSAFDNALVDSVSAALDALGPTVKESIFLLLQRRNSISPDGIPKLVGEFAKALQDVLGPTARVVEKLIIAGLIARKQVPANIAQGRSLLEVVGSIRLSQISQS*
JGI25385J37094_1000000242F073400GAGGMRRDQLRRFLNSEVVGQLSNGLFFEGYVVDQAGRALVFDRDGRAPHQISATRVKWLAKAVRYC*
JGI25385J37094_1000000243F022852N/AMRGLTVTIPYSVRISRELLEEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKQGDVGLQKVTVAAYPKKIHDQAFQR*
JGI25385J37094_1000000248F005627N/AMQSPIRRYLPHLLVGLTISLIMVGAYLAVGFASLTAPKALWSVNPVTIAFSGSAGIGSSGSVGEVVKCAPKVENVVFHTAVSNPTKLSLSVSPGGEATCGPAPDPVTVTASCLVAAPNCKGTYTGTVTILEGYTTIPPSLSVTIVVT*
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