Scaffold JGI25385J37094

Basic Information
Taxon OID	3300002558 Open in IMG/M
Scaffold ID	JGI25385J37094_10000010 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002558 Open in IMG/M

Scaffold ID

JGI25385J37094_10000010 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30010
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (69.77%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

30010

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (69.77%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009950	Metagenome	310	Y
F012651	Metagenome	278	Y
F013998	Metagenome / Metatranscriptome	266	N
F014491	Metagenome / Metatranscriptome	262	N
F019810	Metagenome	227	N
F019978	Metagenome	226	N
F040025	Metagenome	162	N
F063557	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000001013	F063557	AGG	VESQRARLVEQLQAQEVLLDLTIAPFEPLTPGNGQSTGEKKEKLANAIKERIPEESLERLRRQLAGRLVGVTVVFLLWKGSPSVSNTRPVKDLDNLLKIVFDVLRHGPQGIGIIEEDSYIGEVYATKQLVSREEDEGYRIIMEEHHDPQMLRTLKQYYSKIPA*
JGI25385J37094_1000001019	F009950	GAGG	MKITMKANGKRLKPWKAAETIFHVEETVRAEHLELLQKAHLVPQSERKKHDGKDIFEPGEVFYMTMETEKGPIKVAYVHWRPTVNCGEHYRFLNPDGTLGERMTSAIKVGKEFQP*
JGI25385J37094_1000001023	F019810	GAGG	LESRLDSGLEIRRILLLTRLREVSKGMTLPQLVKDCGKVSGWNIPGKTAWEIVQHVVQSLIDDKLVALGTKFVVTIRGREYLEDPLKWRIDEKTTEELADDMFWKEIYDVFGKAYRRLKSKIS*
JGI25385J37094_1000001034	F040025	N/A	VSSEDYESPEQLLLSDPVRRKALELFEHEQEATGEEYDFEELFVRILWERDWTDKLASVIGKIRNRFHLRNTDTKLSLGLSALIPDMNEVAKAYEEMTSGYKEFIRTVLQAKIAGKETNKKTPPIILKNRFDPTK*
JGI25385J37094_1000001036	F019978	GGA	MSEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCSDCQRYIRXGQLTREEEKIGEEQGFCRCAKNVLKP*
JGI25385J37094_1000001041	F013998	GAGG	MPLKMHKLLSLIAFILALIGGLLVVVSALGGLERLSIGSLAINGLVFLFGLGAILGGWLIYTGIRKLGGIMTLFAGIILFVLTRGAGTSVILVIVAGVLGLVAAEMKPWWAFWR*
JGI25385J37094_1000001042	F014491	GGAG	VTAGESKSSWHNTAMILLILASLAMFGTIAYIITLQDVTNSAISYITGLLISVTGILLGLSGLTPASKSLERMKLQVTLTITTLLWLVAVVMIAQTAGPFAFATSTAYLRYLFLVGIALFTVLVVMYSTSTIEATRQRLMAEQAAKSSQPGRTTG*
JGI25385J37094_100000106	F012651	GAG	LAATGRFGWFLIGVIIGAIILEIFNATVRFVPRWLGAATAIIGFLIHLVAWFGLMLAVVGTLGSRVIRKDQMNYALIGFGAIIVTLELWLSIAFG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25385J37094_10000010

Overview

Ecosystem & Geography

Associated Families

Sequences