Scaffold JGI25385J37094

Basic Information
Taxon OID	3300002558 Open in IMG/M
Scaffold ID	JGI25385J37094_10000204 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002558 Open in IMG/M

Scaffold ID

JGI25385J37094_10000204 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13760
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13760

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N
F019106	Metagenome	231	N
F035244	Metagenome	172	N
F097102	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000020410	F097102	GAGG	LEIEVYNCGCRVRIYEVEFGESKNDLTERPSLISDYSPCSKHRYARKIPPREARLLKVRGEHEAFLNE*
JGI25385J37094_1000020411	F019106	N/A	MGDRIISWKMASQVPLLTLSRLLVLIGGIVLLVGGILEAANVGGLMDLGTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGIVVFIGGLIGLVSHYVKV*
JGI25385J37094_1000020412	F012334	N/A	MSSKRPVELGREVRLFLLFLSEINLVMGALFFMYPNLVIGVWPWPVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILLLVGGTFFGITSIVSIVLAASQGGGYVISTWTGYFIVASLGNFYLLYRYRWSRKPQDRLPAGQPWRTARWFFRIQTVVVGVFGIMMLLLPEVAQQQFWPWHVATPTLQMFAGLFLATCLATGWASLQTDIGRIRVLLPLDVIFPSLALFAVWIHWDVISRESPSVPVTGVWVFIYAFVAVGSAYLHFFSRKKMVM*
JGI25385J37094_1000020414	F017278	GAG	MRDEVRREAKEALEAMRKDLQQLSKDLVVASKTLKTSTERFVQDTGPKVSAGLEETMETFRRTMTTIDKQTKPQQAKLLRTYKRFLTKQVDFIEKRLKQTE*
JGI25385J37094_100002048	F035244	GAG	MSKRDWVNSPRINLISLLAGALALASLFLPWWGLDASGFGSSVSPRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTRNIRPLIGSFILSVLTPIAYLGVVSYAVTNSCNGQSNCLSGPFGTETVFGITLNWGFQIGFYLYVVAGTLTLVGLGFHRIFHKTIPTTQKPSSQLSKSTN*
JGI25385J37094_100002049	F015579	GGGGG	LGSDSKKPPRPRHRFSFSGQTRQPEGPAKPREANVTRNDILNSLTKYAHPQEGQVREAVEIQDPVQVSDSGQRAIPARTRNRGSARGALVVFLGGFLAVWLYGYATGAYEIPYLRGVTESPEVQVGAQLVSSSPILFGAVSVSVLLGALYLRHRKKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25385J37094_10000204

Overview

Ecosystem & Geography

Associated Families

Sequences