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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002558 Open in IMG/M |
| Scaffold ID | JGI25385J37094_10024945 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2127 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001571 | Metagenome / Metatranscriptome | 669 | Y |
| F011479 | Metagenome / Metatranscriptome | 290 | Y |
| F017116 | Metagenome | 242 | Y |
| F020766 | Metagenome / Metatranscriptome | 222 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25385J37094_100249451 | F011479 | AGG | MSAVSFDDLVSQSVSETMSKILGATTWKSVNFFFDTKTAAREPEAFAALLEKVFGLTSKVLQKKIAETLLNKVGAVQPSNATDFRQILRLAKAKFPRTTVPGQIGS* |
| JGI25385J37094_100249452 | F017116 | GGA | MASDPIITMFETFNLVLILVAFAIFARLAFKGKSLGSFRFQLSIFLLIWVVSEIPHIAETIGFLAATGYEDTGLYLHAASMAVFATFVGWRSLRFLSYHPPAPITTVSLPTETPKVLKS* |
| JGI25385J37094_100249453 | F020766 | AGG | MDLATGGMVLFTIMVAAGIIPLIMAIKVKVHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLILLIGLGAYYSKVGIA* |
| JGI25385J37094_100249454 | F001571 | GAG | VTGSVPEKRLALIHRVIVPDKEYPKEYAVLVTDSRSIFIRLEKTRSSYWLRGEMKFGTALMTDVIPKTLEDYEQTSVESLIADNANLTIPHEKVTSLVLRKEEPEFRAREFFVWLTMRRQGHRFQVYDFEMGYRQSSNDETTLKFYMVPLGAYFKPRRQTQTRQTILREYATDALGIFQKVLREKSYLHKTIHGTVQFVPSNRENGIAGRSLE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |