NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25330J36431_1011908

Scaffold JGI25330J36431_1011908


Overview

Basic Information
Taxon OID3300002559 Open in IMG/M
Scaffold IDJGI25330J36431_1011908 Open in IMG/M
Source Dataset NameIonic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1187
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location
Location NameJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004068Metagenome / Metatranscriptome454Y
F028398Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
JGI25330J36431_10119081F028398N/AMVQNAPKHYETHQNMSLRSDGVDRVDLLQKILTQLCGLNFCINYNSSARVEPSIVKQR
JGI25330J36431_10119082F004068AGGMGWIGCVRCENIQRDFVAQTFALIAPVQPILHRVSCSNKMVSNAPKPYETQQNMSLGSDGMDSVDLLQKILTQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVQWGGSGAFVAKNSDTTSWDELLHYLH*
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