NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25383J37093_10000002

Scaffold JGI25383J37093_10000002


Overview

Basic Information
Taxon OID3300002560 Open in IMG/M
Scaffold IDJGI25383J37093_10000002 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34134
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (68.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005263Metagenome / Metatranscriptome406Y
F023823Metagenome208N
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
JGI25383J37093_1000000220F042845AGGAGMDTRKWKAFLRMNGETTVDTSQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQTPRRRGRGQVGD*
JGI25383J37093_1000000221F046962GGAMEEIANSGYPXETTSRTVLXDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGSHREWMKGREVYFKVEGKVDGQNCLDEAAPRSI*
JGI25383J37093_1000000226F005263N/ALERRARRIFTIDHDVSEKIDELAGGHTLEVNVLVNKAIRRYVEWGRYVDTFKLVTSXPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGXXDSRTIXLRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLXCKIGXASTLRTIVPKSFXEQLAKQSIERTVGS*
JGI25383J37093_100000027F023823GGGGGLEPAEALVLLSLRYVSGSKCWCLIELGDETKSAFDNALVDSVSAALDALGPTVKESIFLLLQRRNSISPDXIPKLVGEFAKALQDVLGPTARVVEKLIIAGLIARKQVPANIAQGRSLLEVVGSIRLSQISQS*
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