NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25383J37093_10001095

Scaffold JGI25383J37093_10001095


Overview

Basic Information
Taxon OID3300002560 Open in IMG/M
Scaffold IDJGI25383J37093_10001095 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7228
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008075Metagenome / Metatranscriptome339N
F009595Metagenome315Y
F013400Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
JGI25383J37093_100010952F009595GAGGLRSDMIEIFQGTLVQCFSQTLESLFGRPVKDQLMRVLADHKIPRSEIGTRFDDVAKVLTDVFGSSSRLLIYKTVVELYDEYSVRANFGFYDSLRDQILYLRERVLADIIKPRHSPSIDDSIYITPRRPID*
JGI25383J37093_100010953F008075AGCAGGMRQSPGFANVFEASVAEGLANTLGAIVMQTLKSVLSYSFETYAEKPSELHRELSRVFGSGATTLERMITNELFRRLDLQYSNELDFEASVNLARRDMVISERGNN*
JGI25383J37093_100010956F013400AGGAGMTDATLLTGMWIFAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSLFGIXLLLINPDLIAGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFKLAAKKPPGAGSSTF*
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