NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25383J37093_10001740

Scaffold JGI25383J37093_10001740


Overview

Basic Information
Taxon OID3300002560 Open in IMG/M
Scaffold IDJGI25383J37093_10001740 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6158
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014601Metagenome / Metatranscriptome261Y
F025249Metagenome202Y
F028763Metagenome190N

Sequences

Protein IDFamilyRBSSequence
JGI25383J37093_100017404F025249GGAGGMSFLSSRFNASSEENRDPSTGSYAGVPPPSVFGIIVVGLLAGLVVGLLSGPDFTLQGFFLGFAGGALITAGLYXYLAERSQPAR*
JGI25383J37093_100017405F028763AGGAGMSEPARSKGRIALGVFAIIMGCVSLVGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKEAVY*
JGI25383J37093_100017406F014601AGGAGGMSGSTGEGQRPSPVPRAVLAGLIAGMAAGLVSYYVINSVLGLIIGFIAGAIVGSRTVLLMNRAREQDK*
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