NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25383J37093_10015207

Scaffold JGI25383J37093_10015207


Overview

Basic Information
Taxon OID3300002560 Open in IMG/M
Scaffold IDJGI25383J37093_10015207 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2552
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030030Metagenome / Metatranscriptome186Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
JGI25383J37093_100152072F030030AGGAGMAKFIMSIGENAYDILSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPSIYGGESRNSRTLVSPVARLRH*
JGI25383J37093_100152073F042845AGAAGGMENRKWKAFLRMTGETTVAGEDILTEFKAMVEYLKWIGVDYSMVVQVEAGETDPSRILALEQTPRRREPGQLGD*
JGI25383J37093_100152074F046962N/ALEETANVGYPPETPSQTVPQDTMTDDQLKDLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNSPEEAASRRA*
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