NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25383J37093_10047585

Scaffold JGI25383J37093_10047585


Overview

Basic Information
Taxon OID3300002560 Open in IMG/M
Scaffold IDJGI25383J37093_10047585 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1393
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F005023Metagenome / Metatranscriptome414Y

Sequences

Protein IDFamilyRBSSequence
JGI25383J37093_100475851F005023GAGGMKRTALTLALGLLATPAAAQWLGEPMWNDPTAGTGFTIYGDYSRPNSNAGGGTAFGGRVALGAGIFTLTGGVASWDPDLVSQRLLSVGGTVGFRLIGGSLIPVAVNLQLGGGHSFEVTSSTTTSPLQTMLHAAVGLSVPLPTPVVSIEPFVSPGIRYHHYSNVAPGAPDHEVHFGWVIGGNVGVGPIGIHVAYDSEKFDDGTTHGVF
JGI25383J37093_100475852F002331N/AAAAQWLGEPVWNSPKGGTGVTISGDYAHPNSDYGKGNTWGGRASLGIGTLTLTAGVARWKPDLATEGFTSIGGNAAFRLIGGSLLPFSVNLQVGAARTDSANSTPALTTVTSAAGFSVPLPTPGISIEPYFSPGIRYHSSGGANTTQFGYVFGANLSFGLVGVHLAYDNERLKGGGNRGVFGVGAHLDLHLPLGM*
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Institute for Fundamental Biomedical Research
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