NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25384J37096_10000090

Scaffold JGI25384J37096_10000090


Overview

Basic Information
Taxon OID3300002561 Open in IMG/M
Scaffold IDJGI25384J37096_10000090 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19268
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007215Metagenome / Metatranscriptome355Y
F016382Metagenome / Metatranscriptome247Y
F058902Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
JGI25384J37096_1000009017F007215AGGMRRKHIAILVIGVIVIVGVVWYQSLPRQQNGWTTYSVEYVLTKNGNHTQIQASYNNGAVNTEQVYWLNFDNRTAVYNYFRCTPSMTGCTADGCPFTVLNDSVSEYRVKIVCKAGV*
JGI25384J37096_1000009018F058902N/AMASDTKNRESWDEQESSARSISQSIPLKLSRVFRFNDPQTGAPQISDFPDTNPTGDTPLEIRMKHFTEIENFTFLAHVLGHELGGTTPRPIRTVTDLQVPDEGFRTSSTLRKPLA*
JGI25384J37096_100000906F016382AGGAGGLRSSLVDXFYESLGYCFGRVLVETLGPTVQASVYDLLGRSGIKREEISNRFDDVVQALTKTLGASSRVIVHRTVVEMFKEYSQRLDFSYTDSLRDRLALLKETVVANHVLPHRLRDETTFDTVEKPSWIDAPKGQAYGSLYPMKXGVKT*
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