Scaffold JGI25384J37096

Basic Information
Taxon OID	3300002561 Open in IMG/M
Scaffold ID	JGI25384J37096_10001229 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002561 Open in IMG/M

Scaffold ID

JGI25384J37096_10001229 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8353
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8353

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001231	Metagenome / Metatranscriptome	741	Y
F008484	Metagenome / Metatranscriptome	332	Y
F093597	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25384J37096_100012293	F008484	N/A	MTTFTDAELKLVRKLATAPPFTVLQIKQTCPTHSVCNPLPLFRIYKIDDESFEAQWNGYHEAGPKQVFRCEDTA*
JGI25384J37096_100012294	F001231	AGGAGG	MIELRFRIRNNVXNPQDSPRKSTIRPLSLCLPSVEEAALLGEVDEGGRVIPRRGVFFLSNLRTGPVIEGFEDCALGEFVKAQIEALSQNGEPPAKCEVHGLDPFLELAEPDQADRLRDLISVCEFRSNEFTPESAVRFLKESGFFDEYIIVGVKRGNGWRRSRCITTFEGRPSDAATILGHLAEYFGKEQQDDKPHDDRHM*
JGI25384J37096_100012295	F093597	N/A	MKNPLENFDYRIPCDDFFLYELGRLVEEDRASLDDEEFRRLIDAGIHEHVERRLEMRTEIAAHLRKLRSAPVRVLRFVEDIEAPLHDVPTIIQSYVAYLIRRLEQCVDEKPDEKVEAAADLLLESPEDRSAAEAAMETLGSIRSAASARVLAYVISEPVLEEDLEMKAYTLVRAMWPLARPYIFYSLKPHAHEDIPFRWFQLLIECGEASAVDRILEEVLAHANHPDYREDLLVLMELLGQARDPETEGKILQMLNSDETPHTVREILDGFLKRSKTPKHKETGSPEPWASLERLYAANKKYLEAAKLFDTGQKAAANRKLDELLREQPDYPFVLMLKQYCRGGLRPPPTSKPRDRGRS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25384J37096_10001229

Overview

Ecosystem & Geography

Associated Families

Sequences