NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25384J37096_10001513

Scaffold JGI25384J37096_10001513


Overview

Basic Information
Taxon OID3300002561 Open in IMG/M
Scaffold IDJGI25384J37096_10001513 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7692
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031048Metagenome183Y
F040029Metagenome / Metatranscriptome162Y
F069926Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
JGI25384J37096_100015133F040029AGGAVALAPEFFVLLGISIFLAVSVISALLDHHLPSILQYLFQGAAGAGLGELLLSQGLSSPTRVWAGIVYLAFALSSLVGVNIRLAIVRRGMNIASIFSQVMTVPVVMISALFLSSFLGNGGDLVFSPASIVTIAVSVLVADLSIFGLLREYSXHGSIRSGLASFPTSAAPASTGSVGPALDSHQHSAQGEDWEESPSKEKE*
JGI25384J37096_100015134F031048AGCAGMTLKPERQVRLALLLVSTSVIIITSLLAYNRITYEFPLAVGNTGQSALGPPTSAGVGIVFAMIVVAAILGFGAILSIFGSLRNVSNRISEIVVRKPSPKDSIYGSQKKAEWEEASTQGESKTTDDEILKALWHSKDKKTATAE*
JGI25384J37096_100015136F069926GAGMIGIALLAIVLSFLSLSYWFDPGRVIWTKNGTVAAVHEYSDPGGGTNWNVLVYIYQQNDIGYLVNTGYVALNGLGTQGHGNYCWNSGSGNCLNAPLRFRLNETLSVAALNNGNFMVKNRQPDFA*
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