NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25382J37095_10015743

Scaffold JGI25382J37095_10015743


Overview

Basic Information
Taxon OID3300002562 Open in IMG/M
Scaffold IDJGI25382J37095_10015743 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013075Metagenome274Y
F026836Metagenome / Metatranscriptome196Y
F037660Metagenome167Y
F082433Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
JGI25382J37095_100157432F037660AGGAGLAASSSTAKKKPDPRATALAAGLFAGLVAGLIVYLFAGLPGFVVAFIIGVITGSRATLLVNRVREQPS*
JGI25382J37095_100157433F026836GGAGMKQEPRSIRRLVLGIFSIALGIVSLVAFFSITYIAGVGFLGGFYGFILIALGVGLILPKKESQKEEIQ*
JGI25382J37095_100157436F013075GGAGMTPAEFLPRAHSRRLGELDVSNWKDLAKGRNASRIDPAIREIVSSLNDKGYKTFSSCSGGHRANLRRRFDRHESGYIAFSPPSRVPFALYLSLRSRNQDFMFEAEAVIHDGNGDRRETMYTQLDWQLVDQRKHRLEYYEKLFLEMKRIINQLPGQPGDHKEVLTGLLGKPHLPLGSRIVNGQMKRFSR*
JGI25382J37095_100157437F082433N/ATPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ*
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