NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25382J37095_10165672

Scaffold JGI25382J37095_10165672


Overview

Basic Information
Taxon OID3300002562 Open in IMG/M
Scaffold IDJGI25382J37095_10165672 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018993Metagenome / Metatranscriptome232Y
F051023Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
JGI25382J37095_101656721F018993N/AMPDTVPLAGEAVLEVVSPDGARRYARITQTPFMIGRGAETGNHLQLSD
JGI25382J37095_101656722F051023N/AQPKFVDWSKKPVRIPALLPQLGLPDPPAKPVAGAATSPIELGTPLEVETHMTLRLPPSTTSTAPTGSSVQRDYATFASQYSTKGLTVTASRHINFLLRQVPAERASDYNAFLRAVLNDQAQDFTLDRESPPAPGAKPPARKP*

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