NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold C688J35102_120965536

Scaffold C688J35102_120965536


Overview

Basic Information
Taxon OID3300002568 Open in IMG/M
Scaffold IDC688J35102_120965536 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3431
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameHopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010734Metagenome / Metatranscriptome300Y
F014564Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
C688J35102_1209655363F010734N/AMKTIVFTILGVMLIAPPAQKSAAQKRAPKQQASQQWRPYVYPDDGFAITLPAPTTPHNDGGDRHIHVYTVRLQDGTIFNLRAVHRLMDCETALADLWDKADSNKDPREPVIRGTLKQVELSGLRGLEYETGTSDQRSLHRFHCGDKIFYIISAGYKGKRPADVNRIINSFQVVNPAHQ*
C688J35102_1209655364F014564GGAGMTDAVIKESAIQEANQAFTRQVTNQVARITSELNRLEQLLSAGMVDRRVLSEFRYAVDSARKTGWQVEKWLDGGSRELSTMITEERIHCITRMSNHLASELEVEAKQFAGLNALKDAMKKLDSALAQKV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.