Scaffold C688J35102

Basic Information
Taxon OID	3300002568 Open in IMG/M
Scaffold ID	C688J35102_120983504 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002568 Open in IMG/M

Scaffold ID

C688J35102_120983504 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from Hopland, California, USA - 2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5476
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5476

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location Name	Hopland, California
Coordinates	Lat. (^o)	38.99297339	Long. (^o)	-123.0674491	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hopland, California

Coordinates

Lat. (^o)

38.99297339

Long. (^o)

-123.0674491

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F062651	Metagenome / Metatranscriptome	130	Y
F090124	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
C688J35102_1209835043	F010345	GGAG	MGLFARFWHYSIDTYGGAPVLLLITTVQIALLGWVAAEAIRARRERNDPRLSAEARRVRAAHRAELWQKRVRPLALTMMLLGPGIGLGMSTLLGALGMGALGDVMGSQASADALATTMAHAYREISYAYFLMVGGTFPMLLGPVVVLVARRLDEEGDEARGGEPDELVLHTLKSLLAVAEQQAARAHIDAARTHALLEQALQRRAAA*
C688J35102_1209835045	F062651	AGGAGG	MRTFFVLLGATALLCSCAHEDAAQPVKERSWEQGLDASLSAQIAPVGPIETDQTAYDFIRRREREHALGSKATAAELDEVINASSQVLASALSLPLFKAGVYLGQPRLIERGCNAGRRVTHSALRASGNVDAVMQACNALTAGKQSSNDGCGEGQQKLRDAYALLAAEKSQDAGRAAADGVRMLRDRCQKIAAPLRTPVDPSTKGFIIVWALHANDAPPVTFLAGEQSPNTAEAINDGFLRGVQAVRPMAHNP*
C688J35102_1209835047	F090124	AGGAG	MNRILILCLLAVPAARAADEFKPVKAGEQVAYPLPPMPLPQVQAPPDGKWAETEDSPALRVSRAWVKLGQAAGVERSEATRRLYTAWKTEVNQGGIHGRAAQAAHARFLAAYKKDLEQARSIYEGVLRDVDSMDADGAEGGSGQGSGDTGASSLAKEAADQIQSADRDERLTNSACFLSPDTCQQGDPTDKALQDEISNLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold C688J35102_120983504

Overview

Ecosystem & Geography

Associated Families

Sequences