NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DRAFT_10079890

Scaffold DRAFT_10079890


Overview

Basic Information
Taxon OID3300002597 Open in IMG/M
Scaffold IDDRAFT_10079890 Open in IMG/M
Source Dataset NameCamel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1832
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Camel Rumen → Camel Rumen Microbial Communities From Jandagh-Isfahan, Iran

Source Dataset Sampling Location
Location NameJandaq, Isfahan Province, Iran
CoordinatesLat. (o)34.041281Long. (o)54.414582Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096242Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
DRAFT_100798901F096242N/AMLLKLIKTRQYISGSHCEVWEINHETGNRLLGEVFVLNEHLPLELIYRVTVSVRGICIQGRHCGWQWECERREQAVTEYLKVVQECREEIRIEVCEPTPDLPGYPEVDYHPGDFGEEFTPIIVPLNEDFDE*

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