Scaffold Ga0005471J37259_118662

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0005471J37259_118662

Scaffold Ga0005471J37259_118662

Overview

Basic Information
Taxon OID	3300002681 Open in IMG/M
Scaffold ID	Ga0005471J37259_118662 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	659
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017355	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005471J37259_1186622	F017355	AGGAGG	MVRKSFALLCASVLVFGLSAPVFAQEGSKPAEGTAAKQDRVEGVITRSNKDKSTLVVRNRETNVEKTVQYDSSTQWTSQEHHSKTVNNIDASQVKDDDRVICLGAFDKDGVLHATSISKRLTR*

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