Scaffold JGI25156J39149_1000589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25156J39149_1000589

Scaffold JGI25156J39149_1000589

Overview

Basic Information
Taxon OID	3300002705 Open in IMG/M
Scaffold ID	JGI25156J39149_1000589 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20399
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (76.92%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040711	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25156J39149_100058917	F040711	GAG	MSSDSSRDRLAAALGDDARNVVMERGYSLGFVGVHGQVRLVQFRLSKKGFALNAAADDSDFAAMLDEFTGVVTRLLIERWGGIALRAAFDAEGELVERLYETGTLERCDEVDPVSPAKKLVKDGEQVDAGELLVRASARLVENWGLFNRVPLLTDEHTARDARILKCIGGEAARVHDGQW

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