NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25136J39404_1004802

Scaffold JGI25136J39404_1004802


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1004802 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2293
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015147Metagenome / Metatranscriptome257Y
F023712Metagenome209Y
F089035Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_10048022F089035GAGMTAYEMANKMIRKPKPNAVKRLEMAQDQARKSKRMVKEALETIRLSKPYKRPEDLPILTEWK*
JGI25136J39404_10048026F023712N/AMRETIKTEKMTYKLTWKDEDTNRVSSKEFTGQSGVDHSAMDDALAMAQVVDGNLWPWSLERDGQEISYGWGGEQLDRGRLFPTCG*
JGI25136J39404_10048027F015147N/AMKKTTKNMKWFINDLGLNELDAWLAIIGGATLTATILVALSGNGPEIMRFWRVFFLNL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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