Scaffold Iso3TCLC_10061702

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Iso3TCLC_10061702

Scaffold Iso3TCLC_10061702

Overview

Basic Information
Taxon OID	3300002821 Open in IMG/M
Scaffold ID	Iso3TCLC_10061702 Open in IMG/M
Source Dataset Name	Iso-alkanes.Hi.seq-Iso3T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1941
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Athabasca Oil Sands, Alberta Canada
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.65	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020198	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Iso3TCLC_100617021	F020198	AGGA	MITIPAKKIKSREATMTYLLDPTRLKTLIMDLRSNLKSTQHLCIKEGYEDNPRKCVHSGYHEWPECVPFRRFNHFCYEQGLDWEGCRGMMEIMLNDRFLCECEMLWRYSDEQLEE

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