NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24696J40584_12601098

Scaffold JGI24696J40584_12601098


Overview

Basic Information
Taxon OID3300002834 Open in IMG/M
Scaffold IDJGI24696J40584_12601098 Open in IMG/M
Source Dataset NameCornitermes sp. P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)657
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005119Metagenome / Metatranscriptome411Y

Sequences

Protein IDFamilyRBSSequence
JGI24696J40584_126010982F005119N/ALEKNEYLMKYDKDGAHLYYSVRKALGKKTTDGWYTHTPKPMYEQEDVTVLWNQAVHTDREVTVNRPD
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