Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100000124 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100000124 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	109802
Total Scaffold Genes	160 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	118 (73.75%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

109802

Total Scaffold Genes

160 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

118 (73.75%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F004405	Metagenome / Metatranscriptome	439	Y
F007112	Metagenome	357	Y
F008305	Metagenome / Metatranscriptome	335	Y
F034550	Metagenome / Metatranscriptome	174	N
F097334	Metagenome	104	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000124101	F034550	AGGAG	MKKLKQWGMAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFATIGIRKEDE*
B570J40625_10000012411	F000808	AGGA	MDKEYTYSLTTSYDGELINTLRVSDMLTAVDAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*
B570J40625_10000012412	F100416	AGAAGG	MGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELKGL*
B570J40625_100000124155	F007112	GGA	VHTLHYIAVEADSKQEAFDKVVVSLQPNEDGYRLADWSDWHVVGGGRWSSNANKENNIMAGYNDDPTDVLGFSEDKEKFQEALISVGKWKSEAMNRAIKQFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKETATMLMGGWTPDSGLYDLDENIAEVTYLKERLDKPEQAVRQYLVPVDFHF*
B570J40625_100000124158	F008305	GGAGG	MLGYTYKDIQAFGDSLTVAIDTATDPKIKQGLLTIWDFFEGLLAEGYIDEGVM*
B570J40625_1000001243	F004132	AGGA	MSEVMLQDQLTVSYNPNLLVTYKYIPELTPSHGVQLGEEPAATFMTDKVTDIEWQLHKSRSYADQLAAKRLDINWLEEQIVEWYDPNYTKEEVLQAIIEHFGFNPTKQIEVQGTVSFSGTINVPVSELDDFDLSNVTIDVDLNSYEYDADLNVDEVSLEDHY*
B570J40625_10000012432	F097334	AGG	MPDVLLNNDDITVLGPPETVELLIDIGPEGTRGSQVFVGVGNPNIIEIGQTPLLNDLYINTSPGADYGYLYQYVSQPGSNTWIEILELNPTIYSKKFLTTYVNGEASITIPVSDIVISTATPLTAENFSVQYSIVNDNPVAASMSIPALVGDGEDLVINFKAVEHRTDVDSGPYGDWAVLEGQVTTHLFITIVDEES*
B570J40625_1000001245	F000684	AGGA	MTLGGYTYQLGDLFTTSKTGVTGRIVKFAPINSKLTRVSLQLANGSRRLAMVSTTK*
B570J40625_10000012467	F004405	AGGAG	VEDCTTTDFLYPMKADLYYPIITQTQYGQATREWFYDRTIICNATSIGGAGTEQIKPEAFLQHENKLIARTKTDPRTSSTQTDNAITNILVTNIRNANDEIIYKETAGPRSGRGTIYEVATVDPFSGPFGSVEYFKILLRRTENQTITD*
B570J40625_1000001249	F003393	GAGG	MIDLENDDTIQIVDYVKIDVLTAGQLMVDDCILIGDEVVSIVSIISLPDGYTLEVVNDFGEREIIEVGEYDQFDLMMLQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100000124

Overview

Ecosystem & Geography

Associated Families

Sequences