NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100000179

Scaffold B570J40625_100000179


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100000179 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98877
Total Scaffold Genes158 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (78.48%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Associated Families22

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000473Metagenome / Metatranscriptome1097Y
F000980Metagenome / Metatranscriptome814Y
F001019Metagenome / Metatranscriptome804Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002060Metagenome / Metatranscriptome597Y
F002245Metagenome / Metatranscriptome578Y
F002598Metagenome / Metatranscriptome544Y
F003379Metagenome / Metatranscriptome490Y
F005000Metagenome / Metatranscriptome415Y
F007468Metagenome / Metatranscriptome350Y
F012975Metagenome / Metatranscriptome275Y
F014017Metagenome / Metatranscriptome266Y
F014140Metagenome / Metatranscriptome265Y
F017829Metagenome / Metatranscriptome238Y
F020168Metagenome / Metatranscriptome225Y
F043943Metagenome155Y
F051704Metagenome / Metatranscriptome143Y
F057380Metagenome / Metatranscriptome136N
F080026Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_100000179137F057380N/AMAEIYVNSNSPIRTKIYWEGELASPTGNVTAKVYDITQNPANVISSTNLLLTLTGTAVETDVGTYQVVLPFSYSAYPRKLKLVWEYAVAGSTVGTHTTYVNVVTPYVSINEQIDELNFGSDPSDPNYKTYSDLQMAERYARKLIEEYTQQEFYLYPDTKIIYGDESDTLPLSSKINRIYQIYSNDILLVDNLATPKVNNWLYDPIVSETGFGIRVNRVNLLDNSVYVANGLVPPTINDTYNGVFSKNVKYKIVGEFGWDLVPAQVQMATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNSSASKGTGNLYADQLLAPHVISQMVLI*
B570J40625_100000179145F043943AGGMSYPMTLPVGSLLYFDTGTDLVNPTWTKVSEHNRSSASLEIDRIEKTQRMSNGSLRKIWIADKKQFSASWGMLPTDNTMTVDGGMGASEIKSFYLNKGKGAFKVKISYNGVAARDEIILMSFTSCNFTVMKRNVKSSSASVPQEFWDVSLSLEEV*
B570J40625_100000179158F005000N/AMNHKQIKRFQVRVEFADDSGIPRLKYQYESMLTHDMRSKGYARVLDIDTSFSVEFDGQTWVFLMTLYGVYVGKKKAWLSEGITQGKLIPRNMRPTISSQ*
B570J40625_10000017919F014017GAGVSIEEYQDERIRRQISNEISGLELPPEWRPNEVIRYIVRIIEKSNG*
B570J40625_1000001794F014140N/AMNTYRVKLEVEAEVEAFNETDAKDYVADIFNIDDEIKKVNIIKITEKNK*
B570J40625_10000017946F000441AGAAGMKMSDQYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIRDRLEQVSN*
B570J40625_10000017948F001019AGGAMSYEPTLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR*
B570J40625_10000017949F000263GGAMNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQELSDAIEQEERSEEAMDSMVRTECEGRLDTLTELYKLTYDLSFAIGIRTENRKDGHI*
B570J40625_10000017950F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLDKDLNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY*
B570J40625_10000017954F001125GGCGGMGDRANFGFKDSKGDVLYLYGHWAGHRMLENLANAVEQARPRWSDHSYATRICISQLINEEWPSETGWGLYINQLGDNEHKVPVINWAAKTFTLMEEDLQAEVFSQSLDAFVSKYSSQPSMV*
B570J40625_10000017956F001043AGGAGMSDYKDGFEDGYKFAREEMMEKLAEIDIADIDSWILDRLSEMIEGGTL*
B570J40625_10000017958F000980N/AMSVGSCIILGMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDTPLTKEEPMETTETSAVTIPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTIHVLNSKIDTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYSYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA*
B570J40625_1000001796F012975GAGGMKRSKTKNQESFWENYDLLIWKQSAGGFTDVKGMFRKNQWGVTERIPVNENGIWKLPTKYVRHFK*
B570J40625_10000017961F017829AGGMANRYRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQLLSKATRIEFGS*
B570J40625_10000017965F002245AGGMSNLMKVPHTVVFEAIIDLDKIPASLLPALIALDKSSIEQMCKEATLHALGMSNVLPLANDNNTWAEVTIKGDN*
B570J40625_10000017966F020168GAGMYDVIGSVIGIILIAFLCSPIVLAVYMWRGAKIDSDNDGKDDVPYRWEKQ*
B570J40625_10000017972F002598AGAAGGMATKLYTIESLLVGQNYRSRNRHFAGEIVSAKPRPEIWYGDKTEAFLIEIRTGGLRNKFATVAVKVGE*
B570J40625_1000001798F000473AGGMEFINKDKNHFKYGINQWTGEPNKPVFYNKEMAIAVRGIKKPVIGLQMDIIKYPEFLCLRLYEDNFIQFTGNKKEMVIDYLGKVKKVIESYGVRCELEGVPSQNVLGKGI*
B570J40625_10000017987F051704N/AMHDHENIVLTTGSGITEMQLMWIIMGAMAIHHIWMWWKMKKKNCNCK*
B570J40625_10000017988F003379GGAMKKIYALIALTATAVFSGLAMSKFLNWAGQQEIFDFDLNEDIDHEEI*
B570J40625_1000001799F002060N/AMEINYLSVVMAISAALVSGMGTALVAGFRDNKKERIRRSEREQDHLKLDLRDLKIELYKIEKELNEWKDKYYNAIQELIGIKAELEATVIELAHFEHHMDELDR*
B570J40625_10000017990F080026GGAMSYSQEQMDFAHKVVFRLMEILKVCPNVDDKYKCHTAHQKAHTRCVDLMVLLAEITNLPEYLTYLGNNPETNKDPYGWITEYPVAEKIVEKTVDLENNV*
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