Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100000395 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100000395 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	71485
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	74 (89.16%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

71485

Total Scaffold Genes

83 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

74 (89.16%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022885	Metagenome / Metatranscriptome	212	Y
F035309	Metagenome / Metatranscriptome	172	Y
F067749	Metagenome	125	N
F078710	Metagenome	116	Y
F082702	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000003953	F022885	AGGA	MTDLVDNEFGIEYEQISIKKLRIFRVGKQWLVEYQRYVRLWAPWDHFWWYNDGQYVEYYDALARVNDLKASGYANVPRFMNVKTFEVEQ*
B570J40625_10000039539	F035309	AGG	MKKLITFAIVSSMLISTPVLARNYDRTEHREHKQKRKSGCGWLCSAIIGGVVVGVLASKERAPEEDRNQDYNDTRYYPPDYRYDRRYCVREQITEWRYGRRYVYWETTCN*
B570J40625_10000039556	F067749	GGA	MRPIVYVPEVPNLECGPNGQISFRQMEDYFVGIAKIISQLKLQAKFIQDECGKELIEAIRDMEKLVDDITGILMTDVFKKIKSKEQEMKYKVREFLKEIDVWFQKRIVDALLKIVDILGIPNPLTTPIPFITAVTLVDEAGNPVRYQPVINDLFTKEGKVKIKAAIAEDIESVRKFFGDGKYDGTLGIKSPEHEAEEFWQKALAWMKELLSDFIAACINALIGLLTKIPIIGPIIEKIGVFIDPTKPIKAQLKLKYEDFKKRIKKAKEDVLSGKAIEDFGEKLLQELIDFVLNLPIPLFGTLGNLIGFDNEERKKKETIHSKEELWHRIEDAFEDAMEKIKKFFQTDLIAKIHDIILKAPGWILQQFPIVGKILDTIKLIIDICRGKVSICQVLNIILKPIFGIPDAILKFIPNCIEIRRTKYGLEPNPDNLPKWAQPASATV*
B570J40625_10000039570	F082702	AGGAG	MAGASRLVATITNNNGRLSSAGPITLKNQIQEIRSIENILDVSVVEAANGATLIYNSQNDKYEVRQLSFADLAVDLDGGSF*
B570J40625_1000003958	F078710	GAG	MSHSSVVKENEDGELYIELSDELMESMGWDIDTELVWTVYDDGKIGLRKRTDDSSNET*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100000395

Overview

Ecosystem & Geography

Associated Families

Sequences