Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100000509 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100000509 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65527
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (72.37%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

65527

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (72.37%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F005054	Metagenome / Metatranscriptome	413	Y
F006841	Metagenome / Metatranscriptome	363	Y
F013888	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000050926	F005054	N/A	MAEILLNSQSPVTHQIFWNGDIAVPENDPIVKVYDVTNDPAINPPIAPTTLLETLTAVADETNPGSYTVYIPLNHTNRNKTLRLKWEYYIGEKFVYKEDEVFVVTPYVDFNHIEDLGISIDPSDPNYKSYKELCRAEKYARKRIEEYTHQKFYLYDESYSITGYNSDVLPLPAKMYDLHELYANDILLVNNIQGINNWNYNVEIVTTGYGLRINRAAMLDNTVYTANGMVPPSIHDSSGVFRSDTTYEVNGRFGWEKVPDSVELAGIELMKDYFSNDINWKNNYIKNMSTFDWDFEYNVDVFRGTGNAYADKLLADYVLSGAAII*
B570J40625_10000050927	F001229	N/A	MNTIVDAVLSMKLDVYRQTDEQDPDTGAIKKQWIFYKTLPCHAKGVISNSSSTRTSDKQVMGNKYYNDQVLQIRTAQRLTLREKITNIRDANNNYIWTEINSPNDTPTVFEIMGTTPITDPFGKVIGYNSSVKRSENQQIGF*
B570J40625_10000050929	F000258	GGGGG	MPNYKLDAVFELRKFLWEKLKAANIFNPNDYYSDNLDETIIPILPIQQAPEMNQFLSGKKHIVYDKVGLSYENNWLICCEQILFTIYSTEVIDIVEIRNFMTDQFRRMDDSARDVNYWDKLSNKFKFHSIFIADISPTAPSEELQGFFAADVILEVKYSRITDNNGRFA*
B570J40625_10000050931	F006841	AGGAGG	LATKVYDVEEIELQNGAKVKLKPLSIKQLRKFMEVVKKTQDSNDENVTLGILVEACAVALETQLPDLAADREKLEDALDVPTINRILEVCGGIKMDDPNLIAAAVLAGQN*
B570J40625_10000050945	F002501	AGG	MMKCGKCKGRVFVDRVFSQKLHVELFCIMCGKRWMINKDTSSLGRWLEQAEKNKLKDLAISS*
B570J40625_10000050946	F001464	AGG	MVRASRKKQTKRFSYFFLNNKIHKVLNYSRAKDELIAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQVLNKHKITIEDYILDGKIKYPQKVYPIGNPESDWYKFMYSESDIMDIHQFILESGYSKNMPSKNELRALLKHNTILYTKTTEGNFVPVWKAD*
B570J40625_10000050968	F013888	AGAAGG	MAIVGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRIATRPEWVPIVQNMDMNIKLMVREPSTMSDAINFMIGECNDTVMVGMPDTYILNAPVNIYKDMTKEDKADLVLGVWECGEDIKGRVGQVLLSGNKVIGSEDKVDNCDYPDMWGTMLFRKNMIRYLDPKLDHPGKQLKDWIQDGVNIRAVKPGGRYMDIGTLKGLKQLYKEMDNA*
B570J40625_10000050970	F000369	N/A	MDIELADHFDRMNKVVEELLKGNNPTQIATVTGFKRAEVIGYIDEWKEVVKNDSGARDRAKQAISGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQEILVKILKEVTATCPKCKMEVAKRLSQITGVVEPVVIHDEQEAL*
B570J40625_10000050972	F000376	GGA	MSIYQDKAKECKCCGKHVPLPVRLKEYNGIKVCPTTFDNIMEYKKIWNESGKRPPGSIRKHFSDYVQQIVEKSIDNNQSTNI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100000509

Overview

Ecosystem & Geography

Associated Families

Sequences