Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100002923 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100002923 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32012
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (68.63%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

32012

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (68.63%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F012758	Metagenome	277	Y
F036596	Metagenome / Metatranscriptome	169	Y
F043233	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000029231	F012758	N/A	MLEVKLMDEPGAAPGAIEKAKNGREIFSDKIADEIVAACGSGFTLEKAGALVGVNANTIKTWASRKPEFARRVETARKKHELSLLRDIELAGQKSWQAKAWLAERVYNHAIPSARLQVSQDVTHGISGNLASLLAGIAGRKKITSTPEKRQIESGHNYIDVQPVATKPENHLSNNK
B570J40625_1000029232	F036596	N/A	MNKTKTWKIGECCTGGIIQAKISENAYFPSSTTIKILVKEWKTGKIIHSDIFGRIHESRLVNYLHDMTTSYHAETIMEWIKENAWQHNVLVTMEGRN*
B570J40625_10000292336	F002149	N/A	MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGVVEDKDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYCYMTFMRKARV*
B570J40625_10000292338	F000635	AGGA	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRLITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDGRTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNVIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA*
B570J40625_10000292346	F012569	N/A	MSRALDKFQAQYGFSVGTQGTAPAGYWAIQMLSDTTFSAISGRYDGTLTGITIGAGNIIYGEFNSYTAGTGTVIGYIAG*
B570J40625_10000292347	F010603	AGGAG	MSNELFRSPIKAKNKTVRIVSTPFENVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
B570J40625_10000292348	F004760	AGGA	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSKYTPDSIKRVALRRK*
B570J40625_10000292351	F043233	N/A	AESASDLSKKVAEYEKELSQLRKATTPASGQPKGPAKTKAFHELTLDEQERELMKMASEVDRG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100002923

Overview

Ecosystem & Geography

Associated Families

Sequences