Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100009183 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100009183 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18091
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (58.93%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

18091

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (58.93%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004546	Metagenome / Metatranscriptome	433	Y
F007569	Metagenome / Metatranscriptome	348	Y
F013172	Metagenome / Metatranscriptome	273	Y
F027765	Metagenome / Metatranscriptome	193	Y
F032934	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000918314	F027765	N/A	MPIIAKRLDVPMNDEDIRQFMSAFEDFMKHAEVEEFNHDAWVVAKQYTDNFYEQKAAELEVTVDYYISEFV*
B570J40625_10000918317	F002243	GAG	MTAFPTLQSSDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC*
B570J40625_10000918318	F000744	GGA	MVMIETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYSLWEQMDSSQTGLRNDVVPSF*
B570J40625_10000918321	F013172	GGAGG	MTYYWATKLNNATNRRIGKLQGEDVKIDTTTHAGRQVIGYNYLEVVVEEDDE*
B570J40625_10000918322	F032934	AGGAG	MKPITIKQFANRWYLVWSDTGRTIASFASEFEAYAARRFMIEYNKTGGNQ*
B570J40625_10000918335	F000345	GGA	VTLVSLELSLEKMTEKKNSWQEWWDSEACKQLQKSHKEGVERAVGKYFMLSEEDKLDMVQAICYIMCKAEEKGTSHRGLQDALGVYPAGFWVSELMDVHNALWSYYHDQKKEKELRDDLDALDNFIK*
B570J40625_10000918344	F004546	GAG	MDYTEEFPFDQFPWKLVYQEGKETRKCYFQTEDHRKKHIERYQLKKKDIKLSYKFEE*
B570J40625_10000918345	F007569	N/A	MNFTSEQYKLIYTAVRRYQYDKTVLNSKEYNTCSEVLDELFDSVYTQRVEQPT*
B570J40625_10000918348	F003331	GAG	MKPVTEKAQIYKNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLNIARWTTFDSEKPQYLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100009183

Overview

Ecosystem & Geography

Associated Families

Sequences