Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100009674 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100009674 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17577
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (65.22%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

17577

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (65.22%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001280	Metagenome / Metatranscriptome	732	Y
F004666	Metagenome / Metatranscriptome	428	Y
F020171	Metagenome / Metatranscriptome	225	Y
F038669	Metagenome / Metatranscriptome	165	Y
F047650	Metagenome / Metatranscriptome	149	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000096743	F073565	AGGAG	MSDGKDLTGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK*
B570J40625_10000967432	F004666	AGG	MTTKREYLKSKGITVGRRGRFSGAAKVVLAEADKNGMKFTAEVPTKTK*
B570J40625_10000967434	F038669	GGAGG	MSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDISELQDNPEYKYFSGRMDTLTEIYIMTYNLAFAISDRSKARG*
B570J40625_10000967437	F020171	AGGA	MPELFIDTVAEHITGAMQQEIAEQLFEDWSNKNLDEGAEYAEYEFMQYASPELKQEYNKFYSYIEGNEYYLC*
B570J40625_10000967438	F000450	GGCGG	MGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWADGRDPLNKVRGMNNKALFTMDLTSFCEKYALERLLVV*
B570J40625_10000967439	F047650	GGA	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVIELNKKEDLPKLKEMAE*
B570J40625_10000967441	F000311	GGA	MYFELTAPDRLSMERAYWDAQIIGLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLIESYTSDYEPTGYTRR*
B570J40625_1000096745	F001280	AGCAGG	MCIECGCESVGSETGIVSAPVIDVSRDGESGLTLDMTSTPEQTRQFINGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100009674

Overview

Ecosystem & Geography

Associated Families

Sequences