NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100012156

Scaffold B570J40625_100012156


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100012156 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15458
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (78.72%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F006112Metagenome / Metatranscriptome381Y
F008493Metagenome / Metatranscriptome332Y
F010760Metagenome / Metatranscriptome299Y
F044488Metagenome / Metatranscriptome154Y
F064710Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10001215615F044488N/AMRYGVSLSKDYLTSECVVIRDFLSVPKGRVLAIIVREDRYEAEQEAQRLCDLLNNDEQTKLS*
B570J40625_10001215629F010760AGGAGMLDISKIVKTYSGKNGACMCGCAGKYSYTAHGAAEDGPGYDVTDSVNERSVRIIARKVLSNPSTKFEDSYAFVVEGNRIKAVFFKETA*
B570J40625_10001215639F006112AGGAGMKQDYTMYIYKADKRCKTGERLFSTTVWQGRTEEGMRHECNGLYWLYPATKGWRFEYFPTMKTVKNLMSGKDVQIAHDTPRSCDPSSELYWTM*
B570J40625_10001215640F008493N/AMTSERGDSYIGLTRKSLPNANKVVAERWRKHKSRAVNENRLWALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
B570J40625_10001215641F064710AGGAGMQDNIKEKLTSLMLQMQDIIMEDYEDNVDIQDAFNALASAFDYYIED*
B570J40625_1000121566F000354GGAGMTKVNYDKFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHIMESEFDFEDVGNGEYAAFEAGVKYALTKMNIAFEAAALDLQICEVDLVESMGFMMVRCDDEPEDFVKRVMKKPVLMVDSWC*
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