Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100013723 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100013723 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14378
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (73.53%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

14378

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (73.53%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F018352	Metagenome / Metatranscriptome	235	Y
F019826	Metagenome / Metatranscriptome	227	N
F020851	Metagenome / Metatranscriptome	221	Y
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001372310	F019826	N/A	MRLMRRSIRLAVSKEEKIANRITTLLSDFTLDLEAIGFYLAKGSPHIIYSRANEVLESMQYNKEVEQLDRGAYYGNGR*
B570J40625_10001372312	F006844	AGGAG	MARWEIEVIFEPTGDYMNFEYETDNEDEDGIFNEISNQLSIVPFLVEKNEEE*
B570J40625_10001372315	F007112	GAG	MHTLHYIAVEADNKQQAFDKVVVSLSREDGYSPADWSDWHVVGGGRWSTNANKESENNLMGGYNDDPTDVLGFSEDKEKFQETVNGIAKWKAEAVNRAIKTIDTDRFISDLVDYASEGGRPGNHFDGNKLMNIYAIKEAANMLMGSWIPDSGFYDLEENIAEVIYLKERLDKPEQASLQYLVPVDFHF*
B570J40625_10001372319	F004132	AGGA	MSEVMTQEQLSVPYNPNLLVTYKYVPEPYAAAAENTFMTDKVTDIEWQLHQSRSYADQLSQKRSDILWLEEQVTEWYNPNYTKEEVLQAIIEHFGFNPTKEIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLSSYEYDADLTVDEVSLEDHY*
B570J40625_10001372320	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIVKFSPINSKTTRVSLKLANGAQRLAMVSTTK*
B570J40625_10001372326	F000808	AGGAG	MEYNYSLTTSYDGELINTLRVSDMLEAVSAWDKCVDFGDAKEYATYNLSDPLGKMYTKTFYRNGKVVIK*
B570J40625_10001372327	F018352	AGGA	MGKFKDTLMGILAHDECYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKENA*
B570J40625_10001372329	F005348	AGG	MINSVMRFDCDECSGSGLIFWGDNLNYDVEKCECENFVLGDLF*
B570J40625_10001372334	F047494	AGGA	MNSLLNKVCKHTPNKNAISIVNDERFTFCENCEQNITSHYREDNDFMSYWTSWKVGK*
B570J40625_1000137235	F020851	N/A	MNKDLIDLAISMTEIDTGIILSLQERDDMIKRIMEKVNG*
B570J40625_1000137236	F011077	N/A	MENNLTWAEEETNLWKGWTYSLIKNRYYFNDIGYESLTDFWADEFLNQAYE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100013723

Overview

Ecosystem & Geography

Associated Families

Sequences