Basic Information | |
---|---|
Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100014503 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13883 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (6.45%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Associated Families | 9 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005293 | Metagenome / Metatranscriptome | 405 | Y |
F006181 | Metagenome / Metatranscriptome | 379 | Y |
F010317 | Metagenome / Metatranscriptome | 305 | Y |
F014974 | Metagenome / Metatranscriptome | 258 | N |
F019468 | Metagenome / Metatranscriptome | 229 | N |
F023343 | Metagenome / Metatranscriptome | 210 | Y |
F027823 | Metagenome / Metatranscriptome | 193 | Y |
F033400 | Metagenome / Metatranscriptome | 177 | N |
F041755 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
B570J40625_1000145032 | F041755 | N/A | MNITAAKMSGEEILAKYPILNTKWKYSHHKDELNGYNGYYYSNYKDWSTEVVTDPWYRNLINNGNPINTTESESIFFTSVEGNKVILVIYLKTYV* |
B570J40625_10001450320 | F023343 | N/A | MSIKFNNVTTASFSVDNFKEEMAMMMFGRSFALAQAGKQCVICGKRAEFFSCDRATREFKISSMCEPCQNEVFETMSDEA* |
B570J40625_10001450327 | F033400 | N/A | MNTADNIDNPFFTYKFDGKKVKTNKLVKNLNDDIALTQAINLFREQNNMTKARNPYSWWKYVLATITYFPKGVEYITVINILNDIAGVNVSKSTATLLARATAGAAPCVVRREYTVRLPDLAYNTKLTASFSRKTAKTKKGRPAFQFKFANTKDARDTILSSAPEMKPLFDLLDKKIVE* |
B570J40625_10001450329 | F014974 | AGGAG | MIKLKDLLLENDDIFIPRRIEDRQTKYNNITQKEVNAIVDDFIAKRYNMSLTLSPKDIDDNGYEYGTLQYNGDFVVPDKLKHTPSNLLLNNSNVTKLPDNLTIGHYDILSVVGCYKLHQLPKGLKVKIVEAASSGVRVIPDDIECDTLNLDSAAYITELPLFKHYIETINLLSAVRFRILPAKFTCGTLNIIDTPVERIPDNVKIKYLKASNCKHLKSIGNNCEIDNLILINSMIESIPTDIKCSNYMNIRNTPFVNQLLKKQGTSEKVMEELKRSYPYVNDFGI* |
B570J40625_1000145033 | F027823 | N/A | MNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDVYDGYDGYYYAYEKDIGTGIMFDPWLREFKVNMPISDDVYKTKMYHTTVESNPILLVLYKKKD* |
B570J40625_1000145034 | F010317 | N/A | MKSIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSTVTEVGNNYFKTKNSVYSYKFL* |
B570J40625_1000145035 | F019468 | N/A | MTIEKTYKLTIKDTAYFLTEEEVTKLYEQCRMVLNIKDLPTTNPVKPNIPYPYDTYPWYPNDTVTPYWTYCTINAGEDNCVKDTNWQPNLCNTVKSSNGINFLSDDMETIKENDKWRSSVQQALDKLSAKTNVTTSDGTTIR* |
B570J40625_1000145036 | F006181 | N/A | MKNIVHVIYPDEAVHSFVMETDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDIVCVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMYARKSNNKLELV |
B570J40625_1000145037 | F005293 | N/A | MVNDSVPFVPTRDDLIGYISDTYKEINGFRPRPVWSELTYEQLDKWGRELAAEVVTYRKQEVVRNRIARGLRRAQQRAWVEKKRSYFTGSTFTIGNVVNF* |
⦗Top⦘ |