Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100017435 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100017435 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12411
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (76.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12411

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (76.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F015988	Metagenome / Metatranscriptome	250	Y
F047643	Metagenome / Metatranscriptome	149	Y
F085211	Metagenome / Metatranscriptome	111	Y
F091920	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000174351	F085211	N/A	DSIVEHKSRPPLRWLANWAGSIASGAILKVSFMEEDGYIGWKYNYNGWLWDKFWPIYEKYGTTYRLRLDLSGKAWDDYDENGVPYWEKLGVVDPDYYEWDYEDEETGDAFRVIKNVKKDL
B570J40625_10001743517	F015988	AGGAG	MESEYIARKTKLVEYIKLHVISLEQDLENISQEMEELDPESKACKELDYEYNHWSGQLLATRHLLSVVEDIL*
B570J40625_10001743518	F000868	GAGG	MSDPCCTIGIQRKGGSMSFLENENQMVIDAIYQEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNQFYDLNPNDQYYLEWDEEK*
B570J40625_10001743520	F000450	AGGA	MGDRANFGFVQPNGDTIVLYGHWAGYNMLGRLADAVIEARARWNDPSYATRIAISQIVGDQWNEETGWGLHVNEIGDNEHKVAIVDWAQQTFSLHNEDSFHNTDNKIRGMSNEAIFTMDLSEFCEKYAINKLLTV*
B570J40625_10001743523	F047643	AGGA	MYYQLQAPTGAACKAAYWEAEFSGLDPYYLESNVFELGTGNIEKVSALISKYNLDILVESDYQPTGYTRR*
B570J40625_10001743530	F091920	N/A	RVEIYDANKLNDLTIYSEQGIDKDYLTEIVFSNLSRFSGNVKAYVYDEIKKKKTVALFLPEQTVNKYKPKQLTRIELGLI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100017435

Overview

Ecosystem & Geography

Associated Families

Sequences