Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100018995 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100018995 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11751
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (24.24%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

11751

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (24.24%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F007690	Metagenome	346	Y
F017485	Metagenome	240	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001899510	F031098	AGTAG	MKTYYDIAIHTASKDVVNIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR*
B570J40625_10001899515	F003291	N/A	MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRSTGIESVVFNKVTDALLLSNYMNATVIDCGNGKMGVAEYKMSEAQYDAMYESDVRAHS*
B570J40625_10001899516	F001754	GGTGG	MTLSLCSKGDGKIPPYQMIKNYNMNTIYNNFAPSKMSNNPKFSVMVEFTDFLGNQHRIVCNNRRKLAEANEFLKMFKSESTKINKILGEYPVVMGQFPKKYHKEIKMELASAGFSKVSNFLIK*
B570J40625_10001899518	F005389	N/A	MANKSKKSAKRTNLYETVSNNIQKITRPSGTVSYRVRVSEDGQMFSQYETSLKKAKALRNSWVG*
B570J40625_1000189952	F007690	AGG	VDDIDKLNNMLTIKNILKLQGQPLVDGWETNNIYEGNHNDTYIFELVKRKPYPIHNELCTIMLERTGHKIFGQPGFSYFFIYNSMRTNISASADWLADKDNMIERLEYMIMNKENL*
B570J40625_1000189953	F018001	N/A	MLTIQNIGDLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARMDNTGVMLDDRAGVIIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK*
B570J40625_10001899530	F017485	N/A	MNNELKTKDILEGITFILMIVATIGMYCLLYEVKELRELTKSATNFRTIRK*
B570J40625_1000189955	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCTISLNRIGELQRNMFKPDTTAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKK*
B570J40625_1000189956	F038234	N/A	MLTIKNIDSLKGTYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNRHYLPIESIKNSYTFIRFLIDELI*
B570J40625_1000189957	F017998	N/A	MNLERLDLEKYEVLEQERNNTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSILR*
B570J40625_1000189958	F037728	N/A	MKRLEIKNFDKAVMDIYSDFFEVKHCSDRGDKYIMSIDTNDVVSFKRLEPKHYKMAIDKAPNEDGNYHIWLWDMGLNISYPMSIERDELSNSSTFTTFLNHMLKVANRGEFSGDVGNRIDNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100018995

Overview

Ecosystem & Geography

Associated Families

Sequences