NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100020122

Scaffold B570J40625_100020122


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100020122 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11311
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F002071Metagenome / Metatranscriptome596Y
F004666Metagenome / Metatranscriptome428Y
F008305Metagenome / Metatranscriptome335Y
F038669Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10002012218F000450AGGCGGMGDRANFVFVDGAGDTICLYGHWAGHNMLGRLADAVIAARPRWNDESYATRIAISQLIGDQWNMETGWGLQVNSIGDNEHKIAVINWQQQTFSLHDWDDHRNRENKVLGMKNEAIFTMDLTMFCDKYALEKILT*
B570J40625_10002012220F008305AGGAMLGYTYKDIQEFGNSLTVAIDSATDPSVKQGLLTIWDFFEGLLAEGYIDENTYYG*
B570J40625_10002012222F038669GGAGGMIMSDKLEPRLQKLVDMGEPGTDIMHGELKNLMYETEQSLLNVSQSQDTPEYKYLLGRLDALTECYVLTYNLAFALNERIVARG*
B570J40625_10002012224F004666AGGAMTTKREYLKSKGITVGRRGRFSAAADHAISEAVKNGVEFTKEATVKSK*
B570J40625_1000201228F002071AGGAMEIGTTYTTTQSGITGIIKAIDNHPSGVNRVLLDVDGKERWTSVSAKN*
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