Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100025145 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100025145 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9742
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (19.23%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9742

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (19.23%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F011298	Metagenome / Metatranscriptome	292	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N
F045700	Metagenome / Metatranscriptome	152	Y
F088881	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002514510	F016528	N/A	MINNNELFAKVLADNPLPYHFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPHGLPNYYIDVETVYGKVE*
B570J40625_10002514517	F011298	N/A	MAHFVKLSVLDPGHDDMENTTNRKYNPQLINLDMVINVEQSKVHSLIFTKNNSTHPIRVKESLDEIIALSRGCNKVLNG*
B570J40625_10002514518	F088881	AGGA	MAVTINYNVDSIQCYTQYDQYTDVVVKVGWSCIGSGIAQVGPQSGSEVKTYYPNTTPLTVNSGSWDSGSFVPFNQLTNQIVMGWVFAEIGNQKDAIDNYVTEQVQQMINPTIVNLPLPWQPTGSSQP*
B570J40625_1000251455	F030360	N/A	MSEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDSYQKWNESITADELRETYEDDIFNCLFEYDLDGYNLAEFLRDKVHLEPDAGLVDILDDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNAKQGIRKYENLYITGIRPDTYQVTISDDPKKYGGYIVGFENVTFVD*
B570J40625_1000251456	F000962	N/A	MENQEQTQIMNAHVPEEIKSKYPHMEFRGKQRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT*
B570J40625_1000251457	F045700	GGA	MNIRPSQCFECETGTYIDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEIIDSKASQIIESNIERNFPGHYDKWKTKNKPRL*
B570J40625_1000251458	F028145	N/A	MKIFLAFFINLALSLFASILLYKLFKVDVSPTIISIGLIVAYMFLPQRFHDWIAEK*
B570J40625_1000251459	F014847	AGG	MEFESNADILRDLMNQLHTLHKENARLLQKIEDLEKHNEELNRKLKSIQSLFL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100025145

Overview

Ecosystem & Geography

Associated Families

Sequences