NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100029875

Scaffold B570J40625_100029875


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100029875 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8627
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001280Metagenome / Metatranscriptome732Y
F002060Metagenome / Metatranscriptome597Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10002987518F002060GGAMNIDPITIIMSISAAMLGGMGTSILVGIRESKREKIRQKEREQDQLKIELKDLKIALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDLNRLD*
B570J40625_10002987519F000671AGGAMEKILCYSCNKSKNKLNVRKSSLLPINLLMCESCISSKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV*
B570J40625_10002987521F000473GAGGMFIDKSLDKQKEHFKYGINQWTGEPNKPVFYNKEMAQKVREIKRPVTDLMMDIVQYPDFLAIRLYEDNFVMYDGIKKEMVIDYVSKIKKLIESYGVRCELEGQPSRGIL*
B570J40625_1000298755F001280AGGAGMCIECGCESVGSESGIANIPGGILDVSRDDEAGLTLSMTSTPEQTREFINE*
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